Publications
* Students or postdocs + (Co-)corresponding author
Preprint
Conformal Selection for Efficient and Accurate Compound Screening in Drug Discovery
Bai, T.*, Tang, P.*, Xu, Y., Svetnik, V., Khalili, A., Yu, X.+, Yang, AY.+
A High-dimensional Model for Identifying Regional Methylation QTLs
Zhao, K. *, Yang, AY., Oualkacha, K., Zeng, Y. *, Klein, K., Hudson, M., Colmegna, I., Bernatsky, S., Greenwood, C.
2025
2024
Structured Learning in Time-dependent Cox Models
[pdf]
[supplementary materials]
[code]
Wang, G.*+, Lian, Y.*, Yang, AY.+, Platt, RW., Wang, R., Perreault, S., Dorais, M., Schnitzer, ME.
Statistics in Medicine
Machine Learning Informed Diagnosis for Congenital Heart Disease in Large Claims Data Source
[pdf]
Marelli, AJ., Li, C.*, Liu, A., Nguyen, H., Moroz, H., Brophy, JM., Guo, L., Buckeridge, DL., Tang, J., Yang, AY., Li, Y.
JACC: Advances
2023
Variable Selection in High Dimensions for Discrete-outcome Individualized Treatment Rules: A Case Study in Reducing Severity of Depression Symptoms
[pdf]
[supplementary materials]
Moodie, EEM., Bian, Z., Coulombe, J., Lian, Y.*, Yang, AY., Shortreed, S.
Biostatistics
A Sparse Additive Model for High-Dimensional Interactions with An Exposure Variable
[pdf]
[supplementary materials] [software]
Bhatnagar, SR.*, Lu, T., Lovato, A., Olds, DL., Kobor, MS., Meaney, MJ., O'Donnell, K., Yang, AY., Greenwood, CMT.
Computational Statistics and Data Analysis
2022
Dissecting the Impact of Molecular T-cell HLA Mismatches in Kidney Transplant Failure: a Retrospective Cohort Study
Lemieux, W., Fleischer, D.*, Yang, AY., Niemann, M., Oualkacha, K., Klement, W., Richard, L., Polychronakos, C., Liwski, R., Claas, F., Gebel, H., Keown, P., Lewin, A., Sapir-Pichhadze, R.
[pdf]
[supplementary materials]
Frontiers in Immunology
2021
Recurrent Disease Progression Networks for Modelling Risk Trajectory of Heart Failure
[pdf]
Lu, X., Liu, A., Fuh, S., Lian, Y.*, Guo, L., Yang, Y., Marelli, A., Li, Y.
PLOS ONE
On Path to Informing Hierarchy of Eplet Mismatches as Determinants of Kidney Transplant Loss
[pdf]
Mohammad, H., Oualkacha, K., Zhang, W., Klement, W., Bourdiec, A., Lamsatfi, J., Yang, Y., Foster, B., Keown, P., Gebel, H., Claas, F., Sapir-Pichhadze, R.
Kidney International Reports
2020
Simultaneous SNP Selection and Adjustment for Population Structure in High Dimensional Prediction Models
[pdf]
[software]
Bhatnagar, SR.*, Yang, Y., Lu, T., Schurr, E., Loredo-Osti, JC, Forest, M., Oualkacha, K., Greenwood, CMT.
PLOS Genetics
Machine Learning to Automate Clinician Designed Empirical Manual for Congenital Heart Disease Identification in Large Claims Database
[abstract]
Marelli, A., Li, C.*, Liu, A., Nguyen, H., Brophy, J., Guo, L., Buckeridge, D., Tang, J., Pineau, J., Yang, Y., Li, Y.
Machine Learning for Healthcare (MLHC)
2019
2018
An Analytic Approach for Interpretable Predictive Models in High Dimensional Data in the Presence of Interactions with Exposures
[pdf]
[supplementary materials]
[software]
Bhatnagar, SR.*, Yang, Y., Khundrakpam, B., Evans, AC., Blanchette, M., Bouchard, L., Greenwood, CMT.
Genetic Epidemiology
2016
2015
2014
2013
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